Day 41 – Coffee and Parkinson’s

Less than a week to go until I’m drinking coffee again. I miss it so much! I’ve noticed some upsides of not drinking coffee: I’m less panicky, and sweat less – both probably related to caffeine’s effect on adrenaline release. But I’m also slower – I can’t do multiple things at once as well as with coffee – and I had those weird migraines I wrote about last week. I also really miss having easy access to a drink that switches my brain on in the mornings.

Some of the benefits of caffeine are not even obvious immediately. Just over a decade ago, I was writing a literature summary as part of my masters requirement in pharmacology. I picked a topic that sounded interesting, and spent a few weeks digging through papers to write a review. The topic I chose was “New drug treatments for Parkinson’s disease”.

The thing with discoveries in science is that you need to be in the right place at the right time, and a lot of that is luck. I was never lucky in research, but this one time, writing the Parkinson’s literature report, my timing was perfect. While I was doing lit research, a new study came out that suggested that caffeine was able to prevent the onset of Parkinson’s disease. Caffeine! Of all the drug treatments I was researching, this newest one was definitely the coolest. It was not in any of our course material yet, and my oral presentation on the paper was the first time several of the professors in the department heard about it. I won an award for this literature review at the time, thanks in a large part to this lucky timing, but now, a decade later, the effect of caffeine on Parkinson’s is well-known.

The paper I read during my masters was “Neuroprotection by Caffeine and A2A Adenosine Receptor Inactivation in a Model of Parkinson’s Disease  In this study, mice were given a small amount of caffeine, which by body weight ratio would amount to about a cup per day for a human. This was enough to slow down the hallmarks of Parkinson’s disease: the loss of dopamine in the striatal part of the brain.

This experiment on mice didn’t come out of the blue. Before then, people had already noticed that Parkinson’s was less common in people who drank coffee regularly. The mouse study was just a way to figure out how it worked. Caffeine blocks the A(2A) adenosine receptor, and according to this study, that’s the mechanism by which it helps prevent Parkinson’s.

Since this study, lots more evidence has been found that shows that caffeine protects against Parkinson’s disease. Recently, one study even suggested that coffee can work as a treatment as well. At three cups of coffee per day, Parkinson’s patients were relieved of some of their symptoms.

So for all the jitters it causes in healthy people, caffeine seems to have the opposite effect on Parkinson’s patients. And if you drink coffee regularly, in moderation, your chances of even getting Parkinson’s are significantly reduced.

And this is just one of the reasons why I could never quit coffee for good.
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Interactive art at Archway

Remember when I mentioned interactive art projects as one of the things I missed when I was in Cambridge? I now walk by an installation every day, on my way to the tube station.

A Million Minutes is an arts initiative in Archway and Finsbury Park.  New projects have been showing up in a shop window close to Archway tube station every few weeks. Yesterday, there was something new.

A Record of Wishful Thinking” starts with a sign that says “Please contribute your wishful thoughts on this window”.

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Pens on string dangle in front of the shop window, and passers-by can leave messages.

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I stopped twice, yesterday morning and tonight, and both times the installation was unattended. Yesterday morning a girl walked up as I was taking photos, and signed her name on the window, but lots of other people did read the instructions.

Here are a few of the wishful thoughts that people wrote on the window yesterday and tonight. It’s interesting to see the different interpretations of “wishful thinking”:

“I wish that everyone could have amazing super power”

“everyone to be happy & it to be sunny”

“I wish the US arms trade would stop destroying our world”

“I wish good health for myself and my family”

“eliminate poverty, oppression, unnecessary illness, exploitation, greed, violence everywhere”

“to be near an ocean away from it all”

“keep my friend Joyce safe in Cyprus”

“to move mountains”

“to have more flowers in Archway”

“classes to teach many skills to people which can enrich their personal development”

The thoughts will be used as the basis for an animation, which will be screened in the shop window on March 28. I haven’t left anything myself yet. Still thinking. Some of these are hard to beat!

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My self-updating address book

About once every week, I see or hear scientists wondering what LinkedIn is actually for. They want to know what to do with it, or how to use it.

You don’t do anything with it. You sign up, you update your info when it changes, and that’s it.

Not everything has to be non-stop action and engagement and social and by-the-minute status updates. Sometimes it’s just useful to have a place that has your most recent work info, and your email address, and an address book of people you’ve worked with that you might want to contact again.

The best way to describe what I use LinkedIn for is a filofax. There are work contacts in there who I don’t normally talk to, and who I don’t want to add on Facebook. They move around a lot. They start new jobs. I lose their email info. Years go by, and suddenly I want to ask them a question for work. LinkedIn has their latest email address.

I don’t log in to LinkedIn regularly at all, but I started a a new job recently, so I was a bit more active than usual. These were my last few LinkedIn interactions:

  • Searched by location to see if I knew people in Boston, because I’m going there soon for the first time in my life. I discovered that some people I went to university with in Amsterdam are now there, so I emailed them
  • Talked to someone about my new job after I changed my profile info, and discovered that they might be able to help me out with something work-related.
  • Received two other messages from people who saw that I changed jobs, one of whom I forgot to email before I left my previous job and whose email address I no longer had.

These happened within a month, but normally months go by where I don’t use LinkedIn – and that’s fine! I don’t use my physical address book very often either. That doesn’t mean it’s useless.

If you never change jobs, and your work contacts don’t change jobs, and you and they are all very good at keeping your email address books up to date, you probably don’t need the extra help. But my main job is talking to people and my Achilles heel is forgetting to update email address books, so I find LinkedIn useful, because people update their OWN info.

One other good reason for scientists to set up a LinkedIn profile, especially for people with unique names, is if you don’t have your own website, and you’re applying for jobs. Google yourself and see what comes up. Your Facebook page, the website of a lab you left three years ago, and archived results of sports events in which you didn’t even win. LinkedIn pages consistently come up very high in Google results, and they give you a chance to represent yourself online in a way that you want. Sure, you can use other sites for this, but LinkedIn has the advantage of being familiar to people who Google you.

I don’t need my LinkedIn profile for that reason, because I have lots of blogs and other pages that I have control over to represent me online, but I have recommended other people to set one up if their Google results look unprofessional. LinkedIn bumps down your athletic track meet results from high school, and old archived message board discussions about 90s TV shows. (If you find that archived thread about Charmed – that’s TOTALLY someone else who just happens to have my exact name and who has never used the internet again after that, OKAY.)

Of course my examples mainly apply to scientists. I would not recommend it to an artist – those people need a personal portfolio to be their top Google hit, not a third-party site. And I’m sure a lot of hardcore business people would laugh (and recruiters would cry) if they found out that I was only using LinkedIn as a self-updating address book. And if you don’t want to use the site at all, that’s fine too. But don’t sign up for LinkedIn expecting it to be Twitter or Facebook. It’s just entirely different. It’s not as social and interactive as you think it should be.

 

MusiSci Tumblr

If you’re on Tumblr, consider following the MusiSci tumblr, which I haven’t been promoting very well. It’s a place to put all the things I find about scientists and musicians (or more broadly about science and music) that I don’t get around to writing full-length blog posts on.

Today the Tumblr was all about the fakes: a fake poster (a design assignment) announcing a fictiotious Bill Nye concert (with the BEST line-up), and a photoshopped image that shows Einstein playing a Peavey guitar that wasn’t produced until after his death.

Usually I feature non-fake things on there, though, like this band, or this video, or this repost from This Is What A Scientist Looks Like.

Have a look around, and follow if you like science and music. (And if you don’t, what in the world are you doing HERE?)

MusiSci

Day 34 – caffeine and migraines

The coffee experiment is getting more interesting. When I was sick, I started having weird flashing lights in my field of vision. I thought it was related to being sick, but it happened again after I was otherwise completely better. Googling a vague description of what it looked like, I found this. The animation on that page is exactly what it looked like. Argh. So apparently I have migraines now. I hope this is related to coffee, which I suppose I’ll find out when I start drinking coffee again. (Meanwhile, I don’t get headaches, just the weird vision thing, so it’s fine until then.)

I tried to find some papers about coffee and migraines, but there doesn’t seem to be much consistent information. Apparently caffeine and the first few days of caffeine withdrawal are both a trigger for migraines, but caffeine is also a treatment. It’s complicated, and depends on the amounts of caffeine and types of migraines.

Day 24 – A customer loyalty card for bees

20130308-212446.jpgToday is day 24 without coffee. I miss it so much. It’s actually worse again now, after finally recovering form my cold. Or maybe it’s because I now work in the middle of London, and pass about ten coffee places in the few minutes walk between the tube stop and the office. So much coffee, so close… I have two coffee chains’ loyalty cards in my wallet begging me to come back and get a discounted coffee. But I’m past the half-way point of my self-imposed coffee-less period, and I’m sure I’ll be able to hold on another three weeks.

Meanwhile, my plan to blog caffeine science in this period was made extra easy by caffeine be prominently in the news this week. A study in Science described how caffeine from nectar of coffee and citrus plants helps bees to remember the plants, and encourages them to visit more flowers of the same type of plant.

In mammals, caffeine improves mental activity by blocking adenosine receptors. When activated, adenosine receptors pass on signals that say “relax”. Caffeine undoes that. In the hippocampus area of the brain, caffeine uses this mechanism to improve memory formation. Bees don’t have a hippocampus, but they have an equivalent area in their brains called Kenyon cells. The researchers showed that caffeine activates Kenyon cells in bees in the same way as it activates the hippocampus in mammals. In other words: it’s biologically possible for caffeine to help memory formation in bees. But does it?

To put the bees to the test, the team trained individual bees to associate the scent of flowers with a mixture of sugar and caffeine. The sugar level was the same for all mixtures, but the caffeine concentration varied. Three days later, bees that were given low doses of caffeine were able to remember the flower far more often than bees that only received sugar.

Coffee and citrus plants use caffeine as a sort of customer loyalty card for bees. Just like the coffee cards that I carry with me, it serves as a reminder to return to the same chain – or type of plant, in this case.

This research is surprising, because until now it was believed that the main reason that plants produce caffeine is to repel insects, and caffeine is toxic to bees – and other insects – at high concentrations. Of course bees are the kind of insect that a flowering plant would rather attract than repel. Plants don’t decide how much caffeine they produce, but in this case, caffeine levels are low enough that they don’t repel the bees, and happen to reward them in the process!

Wright G.A., Baker D.D., Palmer M.J., Stabler D., Mustard J.A., Power E.F., Borland A.M. & Stevenson P.C. (2013). Caffeine in Floral Nectar Enhances a Pollinator’s Memory of Reward, Science, 339 (6124) 1202-1204. DOI:

New job!

As of today I’m working at F1000Research, where I’ll be running all kinds of outreach projects to connect with the researchers and clinicians that use (or should be using!) the journal. It’s still pretty new and the official launch party is yet to come, but there are already a lot of papers there.

The biggest thing that sets F1000Research apart from other publications is the order in which the peer review process happens: Most journals don’t publish a paper until after it has passed peer review, but at F1000Research the papers are published online as soon as they have been accepted for review. The papers don’t get indexed in external databases until after they have received two positive reviews (similar to what happens at other publications) but you can see newly submitted and not-yet-reviewed papers on the site itself.

There are some other interesting features as well, such as the inclusion of all datasets with each submitted paper. If you want to know more, you should ask me about it, because telling you about the journal is my job now!

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Month in media – February 2013

February was a CRAZY month for me. It started with the scio13 watch party. Then my birthday, then friends came to visit, then I got sick, had my last week at my old job, and moved to London. (the latter two while sick). So I didn’t consume as much media as I normally would, but I still read and saw some interesting (and more frivolous) things.

Books
20130303-233426.jpgI finally finished reading all of Open Lab – or The Best Science Writing Online 2012. My own vitamin C story is in there, and I had read a few of the others, but now I’ve finally seen them all. It was interesting to compare writing styles. There is a certain type of post that is very much the style of most of the things in that collection. Many have a personal angle, for example, but there are some other characteristics as well, and I’m still trying to see what it is exactly. Mainly, I want to figure out why the chapters by the good writers are so obviously better. It has something to do with pacing, but if I knew exactly what it was, I’d be emulating it.

Related to that thought: I also read Ed Yong’s epic piece about a dynasty of researchers, and the Open Notebook interview (by Carl Zimmer) about how he wrote it. The Open Notebook is a great resource for science writing, which I should really remember to look at more often.

iPlayer/Netflix
I never properly got caught up with BBC’s Africa, but I did see a very interesting documentary about the history of the LP record on iPlayer: “When albums ruled the world”. I learned that Sergeant Pepper was the very first concept album, that Carole King’s “Tapestry” was the longest-running top album by any female musician in the 21st century, that Tubular Bells was the record that launched Richard Branson’s Virgin emporium, and that Miles Davis changed his style when rock albums started outselling jazz. It was one trivia fact after another, but it all tied nicely together and of course it had lots of music fragments as well.

While sick and packing I watched a lot of random things on Netflix. Some classic comedies like Overboard and Groundhog Day, but I also discovered the film Whip It, which I vaguely recall hearing about when it was in theatres, but never saw. It’s a predictable but fun film about roller derby, directed by Drew Barrymore and starring Ellen Page.

Relatable things
On the Guardian Data Blog, an interactive visualisation that shows how people in the UK commute to work. I cycled to work in Cambridge, like make people there, but starting tomorrow I’ll be taking the tube in London, like many people here!

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A piece that has been prodding my brain ever since I read it: “She who dies with the most likes wins” by Jessica Valenti. It’s about the tendency of women to want to be liked, even when that might not be the best path to being successful. I recognize myself in it, and it bothers me. Should I care less about what people think, or care less about what I want to achieve? Why can’t I have it both ways? There must be women who are nice AND successful out there…

I saw Katherine Ryan perform in Cambridge when my friends were over. I was tired from quitting coffee and from starting to be sick, but they really wanted to do something that night, so we got tickets to see comedy. It turned out to be rather recognizable: Katherine Ryan is Canadian and lives in the UK now, so she made a lot of observations that I could relate to, such as the excessive drinking that’s so common here.

But the one piece of media I related to the most in February were Wheezy Waiter’s YouTube videos about moving. He moved the same day as I did, and I was also packing when he was packing. His packing seemed a lot more fun, though:

And, all right, he also did one of my favourite Harlem Shake videos. I wasn’t going to include any, but I have to admit that Harlem Shake videos made up a large part of my February media consumption.

Day 18 – Spiders on caffeine

In 1948, P.N. Witt tried to change the time of day during which spiders build webs, from crazy early in the morning to a more observable hour. He gave them a range of psychoactive drugs, from LSD to caffeine, but the spiders still built webs well before the crack of dawn. The drugs didn’t change the spiders’ internal web building clock, but it did have an effect on the structure of the webs itself.

Spiders on low doses of caffeine made small, but relatively normal, webs. On higher doses, the webs became erratic and messy.

The spiders on drugs experiment was repeated by NASA in 1995, and they found similar results.

NASA systematically measured the shape of the webs to generate a sort of toxicity scale. They proposed using spiders for toxicity measurements. How this correlates to toxicity in humans is a bit unclear to me from the very brief publication, but then again, LD50 in rats (the default toxicity scale) is not exactly the same as toxicity in humans either, so maybe the spiders could serve as another unit of toxicity levels. What is pretty clear, though, is that in spiders, caffeine has an enormous effect of web building.

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At equivalent doses, marihuana does much less to a spider’s web building skills. Of course, aside from this being a different organism than humans, the dosage of various drugs doesn’t mean much unless you consider what a regular “consumer” dose is. Spiders don’t use marihuana or caffeine, but when humans do, they tend to consume the two in entirely different methods and levels. So the drugged spider webs don’t mean much for human drug use, but it’s pretty striking to see what caffeine does to spiders.

Meanwhile, I’m doing relatively okay without coffee. I’ve been drinking tea, which I drank in between coffee previously as well, so I’m getting much less caffeine. However, I’ve had a cold for a week, and now a sinus infection, and I’m not used to illnesses lasting so long. Normally I’m completely back to full health in three days or so. But I can’t say whether lack of caffeine played a role in my prolonged misery, or whether it’s more the fact that I had my last week at work and moved house. Like I said at the start of the caffeine experiment, I need a control me…

Day 13 – Caffeine and the DSM

The American Psychiatric Association publishes the Diagnostic and Statistical Manual of Mental Disorders – or DSM for short – which standardizes mental disorders, at least in the US. It gets updated every few years, and for each new edition psychiatrists will argue which disorders need to be included, or which need to go. For example, the most high-profile update in the next edition concerns the removal of Asperger’s Syndrome. What was previously Asperger’s is now a subtype of autism.

I was surprised to discover that the DSM also contains caffeine-related mental disorders. Caffeine intoxication, caffeine-induced anxiety disorder, caffeine-induced sleep disorder, and caffeine-related disorder not otherwise specified are all included in the current edition.

Caffeine dependence is not on the list, but in the run-up to the fourth, and more recently the fifth, edition of the DSM, several researchers have made the case to also include caffeine withdrawal as a distinct recognized disorder in the manual.

To qualify for DSM inclusion, a mental disorder has to affect quality of life, among other things, and caffeine withdrawal does that. But it also has a very simple diagnosis and treatment (caffeine!) which makes it almost laughable as inclusion.

It’s not yet clear whether caffeine withdrawal will be included in the new edition, which comes out in May. If it is, it doesn’t change much for people going through withdrawal, other than that it will be an official thing. My headaches and exhaustion felt pretty official, too, but they weren’t yet – that’s the difference.